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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49927789_49928191_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49927789 - 49928191
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTATCTTTATTT
Flanking Amino Acid:
FYMRAAKPDEIRKWTKSHKQ
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
75.5
40.6
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
83.3
0.75
0.8
81.4
35.2
Minor 5ss
42.8
-0.8
2.9
58
40.6
Minor BPS
70.4
0.72
1.5
84.48
36.6

Associated Gene:

Gene:
VRK1
Ensembl Gene ID:
ENSAPLG00000006288
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039532
49899184 - 49947806
48623
ENSAPLT00000023857
49899184 - 49939391
40208
ENSAPLT00000006567
49884589 - 49939391
54803