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Intron Name: Anas_platyrhynchos_platyrhynchos_5_49928280_49929671_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49928280 - 49929671

Intron Length:

1392

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAATATA

5'SS Class:

strong_major

3'SS Sequence:

TCCTTGGATTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTCAG

U12 Branch Point Sequence:

AATTCAGTAACT

Flanking Amino Acid:

GSGLHERSGNSYRFMIMDRF

Intron Amino Acid Position:

133

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.8

85.6

24.7

Major BPS

59.4

0.23

1.5

69.4

37.7

Major PPT

67.5

0.39

65.6

40.2

Minor 5ss

33.2

-1.9

2.9

41.8

44.8

Minor BPS

57.3

0.31

2.2

81.19

39.9

Associated Gene:

Gene:

VRK1

Ensembl Gene ID:

ENSAPLG00000006288

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023857

49899184 - 49939391

40208

ENSAPLT00000006567

49884589 - 49939391

54803

ENSAPLT00000039532

49899184 - 49947806

48623