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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49929781_49929922_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49929781 - 49929922
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
ATTTATGTAACT
Flanking Amino Acid:
KTVLQLGLRILDILEYIHEH
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
79.6
29.3
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
75.6
0.58
1
76.9
37.3
Minor 5ss
45.6
-0.5
2.8
59.8
40
Minor BPS
58.5
0.35
2.2
83.17
37.9

Associated Gene:

Gene:
VRK1
Ensembl Gene ID:
ENSAPLG00000006288
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006567
49884589 - 49939391
54803
ENSAPLT00000039532
49899184 - 49947806
48623
ENSAPLT00000023857
49899184 - 49939391
40208