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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49930016_49930991_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
49930016 - 49930991
Intron Length:
976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTG
5'SS Class:
major
3'SS Sequence:
TGGCAATTACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
AGTTCTTTAACC
Flanking Amino Acid:
LLLGYKNPNQVYLVDYGLAY
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.2
43.7
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
57
0.16
1
48.6
43.7
Minor 5ss
44
-0.7
2.8
58.7
45.8
Minor BPS
81.2
0.96
1
81.67
31.8

Associated Gene:

Gene:
VRK1
Ensembl Gene ID:
ENSAPLG00000006288
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039532
49899184 - 49947806
48623
ENSAPLT00000023857
49899184 - 49939391
40208
ENSAPLT00000006567
49884589 - 49939391
54803