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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49931125_49932377_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49931125 - 49932377
Intron Length:
1253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TGTATATATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TACTTTTTAACC
Flanking Amino Acid:
YTSIDAHKGVAPSRRGDLEI
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
73.4
43.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
70
0.45
1
67.6
42.9
Minor 5ss
35.4
-1.7
3.2
40.5
45.5
Minor BPS
73.8
0.73
1.1
74.61
36.2

Associated Gene:

Gene:
VRK1
Ensembl Gene ID:
ENSAPLG00000006288
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039532
49899184 - 49947806
48623
ENSAPLT00000023857
49899184 - 49939391
40208
ENSAPLT00000006567
49884589 - 49939391
54803