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Intron Name: Anas_platyrhynchos_platyrhynchos_5_49932499_49932794_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49932499 - 49932794

Intron Length:

296

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTGAA

U12 Branch Point Sequence:

AGATTTGAAATT

Flanking Amino Acid:

DPNFVRDSKIRCRDNISDLM

Intron Amino Acid Position:

285

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

0.8

80.3

26.9

Major BPS

78.4

0.71

0.9

69.4

37.7

Major PPT

93.6

0.98

0.7

92.3

26.6

Minor 5ss

28.3

-2.5

2.8

33.7

41.9

Minor BPS

43.2

-0.4

2.1

58.72

39.2

Associated Gene:

Gene:

VRK1

Ensembl Gene ID:

ENSAPLG00000006288

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039532

49899184 - 49947806

48623

ENSAPLT00000023857

49899184 - 49939391

40208

ENSAPLT00000006567

49884589 - 49939391

54803