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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49932854_49933982_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49932854 - 49933982
Intron Length:
1129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
ACCATTTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGTCTAGAAAT
Flanking Amino Acid:
DKCFSGKNKPDELGKYMEKV
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
72.4
0.5
0.8
69.8
35.9
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
52
0.14
1.8
75.26
41.1

Associated Gene:

Gene:
VRK1
Ensembl Gene ID:
ENSAPLG00000006288
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039532
49899184 - 49947806
48623
ENSAPLT00000023857
49899184 - 49939391
40208
ENSAPLT00000006567
49884589 - 49939391
54803