Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_50051945_50053145_F

Intron Information:

Intron Rank:

124735

Intron Class:

minor-like

Intron Phase:

Intron Coordinates:

50051945 - 50053145

Intron Length:

1201

Sequence Information:

Terminal Dinucleotides:

AT-AC

5'SS Sequence:

TGA|ATATCCTTT

5'SS Class:

strong_minor

3'SS Sequence:

CTCTGTTTTTCAC|C

3'SS Class:

degenerate_minor

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

GAGACCTTAGCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

30.9

-1.1

3.3

44.2

Major BPS

88.7

0.96

0.8

36.5

Major PPT

46.3

-0.2

3.2

75.9

Minor 5ss

96.3

1.54

0.8

89.8

28.6

Minor BPS

59.6

0.38

1.7

71.28

44.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017241

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045929

50005536 - 50053221

47686

ENSAPLT00000035724

50035218 - 50053257

18040