Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_50064792_50065017_F

Intron Information:

Intron Rank:

140057

Intron Class:

major

Intron Phase:

Intron Coordinates:

50064792 - 50065017

Intron Length:

226

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTATGTGTC

5'SS Class:

major

3'SS Sequence:

TTTCTCCCTTAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TATTTTTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.63

74.3

34.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

76.4

0.59

0.9

80.4

25.5

Minor 5ss

45.8

-0.4

3.1

65.2

39.7

Minor BPS

65.4

0.56

1.5

80.16

36.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025305

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022323

50064423 - 50074744

10322