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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_50073408_50074376_F

Intron Information:

Intron Rank:
140060
Intron Class:
major
Intron Phase:
Intron Coordinates:
50073408 - 50074376
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
TTTCTGAAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CCTTTCTGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
78.7
29.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
67.9
0.4
1.1
63.5
40.9
Minor 5ss
42.8
-0.8
2.5
50.6
40.3
Minor BPS
57.2
0.22
1.6
64.83
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025305
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022323
50064423 - 50074744
10322