Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_50254095_50256698_F

Intron Information:

Intron Rank:

137564

Intron Class:

major

Intron Phase:

Intron Coordinates:

50254095 - 50256698

Intron Length:

2604

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGTAGC

5'SS Class:

major

3'SS Sequence:

CTTTCTTCGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTCAGTTTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

68.8

42.2

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

78.5

0.64

0.9

73.2

37.3

Minor 5ss

34.8

-1.7

42.1

39.8

Minor BPS

63.3

0.49

1.8

80.13

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024070

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041379

50253290 - 50261550

8261