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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_50261614_50265169_F

Intron Information:

Intron Rank:
137562
Intron Class:
major
Intron Phase:
Intron Coordinates:
50261614 - 50265169
Intron Length:
3556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
84.9
32.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
100
1.12
0.4
100
0
Minor 5ss
39.9
-1.1
3.2
59.5
44.6
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024070
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045949
50261230 - 50357545
96316
ENSAPLT00000028104
50260709 - 50305201
44493
ENSAPLT00000047077
50261230 - 50271917
10688