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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_50445609_50474814_F

Intron Information:

Intron Rank:
133596
Intron Class:
major
Intron Phase:
Intron Coordinates:
50445609 - 50474814
Intron Length:
29206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTGCCTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
83.3
0.75
0.9
80.8
36.8
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
67.2
0.4
1.6
69.63
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021856
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033260
50429508 - 50474950
45443