Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_50498489_50499626_R

Intron Information:

Intron Rank:

129390

Intron Class:

major

Intron Phase:

Intron Coordinates:

50498489 - 50499626

Intron Length:

1138

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGA|GTAAGTCAA

5'SS Class:

major

3'SS Sequence:

CTGGCTTTGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAA

U12 Branch Point Sequence:

GGTTACTGAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

1.1

67.9

39.2

Major BPS

74.4

0.61

0.9

63.6

35.5

Major PPT

63.8

0.31

57.7

43.2

Minor 5ss

34.8

-1.7

2.9

37.7

40.9

Minor BPS

61.9

0.37

1.7

71.68

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016826

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043295

50498377 - 50505073

6697