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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_50619448_50640466_R

Intron Information:

Intron Rank:
134974
Intron Class:
major
Intron Phase:
Intron Coordinates:
50619448 - 50640466
Intron Length:
21019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
TTCTCCCCATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.5
38.5
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
84.8
0.78
0.8
79.6
32.4
Minor 5ss
40.8
-1
2.8
50.5
40
Minor BPS
48.5
-0.1
2.1
67.45
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045468
50601457 - 50640490
39034