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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5079662_5079993_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5079662 - 5079993
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
CAGACTTTAACA
Flanking Amino Acid:
CGWDFTIILVGTGVVLSCGS
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
75.1
0.62
1
65.6
41
Major PPT
89
0.88
0.7
83.5
31.2
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
64.5
0.45
1.4
64.97
41.5

Associated Gene:

Gene:
SERGEF
Ensembl Gene ID:
ENSAPLG00000005876
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006096
4975675 - 5081506
105832