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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5080150_5080561_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5080150 - 5080561
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAACACA
5'SS Class:
major
3'SS Sequence:
TTTGTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTGTTATTC
Flanking Amino Acid:
GGGGHSAVITGAGELFVCGH
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
66.7
38.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.9
0.81
0.8
78.1
40.1
Minor 5ss
39.2
-1.2
2.9
46.5
43.7
Minor BPS
49.3
-0
2.2
66.62
39.6

Associated Gene:

Gene:
SERGEF
Ensembl Gene ID:
ENSAPLG00000005876
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006096
4975675 - 5081506
105832