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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5083952_5084244_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5083952 - 5084244
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCCAGTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTGCTTGAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
TTTGCTTGAATA
Flanking Amino Acid:
ESFEEAKEKMREFAKTIKHP
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.8
0.21
1.3
63.9
42.9
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
68.7
0.42
1
66.1
39.7
Minor 5ss
36.4
-1.5
3.7
56
48.1
Minor BPS
65.7
0.49
1.5
75.76
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006128
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036327
5083705 - 5089390
5686
ENSAPLT00000021243
5083705 - 5091316
7612
ENSAPLT00000006346
5083705 - 5087688
3984