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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5087492_5089280_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5087492 - 5089280
Intron Length:
1789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTTTGAAGT
5'SS Class:
weak_major
3'SS Sequence:
ACCTTTTATCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCATCTTTACAA
Flanking Amino Acid:
ALRLNVLQLPVRVLLSSSPF
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.3
0.01
1.3
53.2
43.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
65.5
0.35
1.1
64.1
40.5
Minor 5ss
39.6
-1.2
2.9
51.5
44.8
Minor BPS
55.8
0.18
1.7
65
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006128
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036327
5083705 - 5089390
5686