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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_50915988_50947053_R

Intron Information:

Intron Rank:
142751
Intron Class:
major
Intron Phase:
Intron Coordinates:
50915988 - 50947053
Intron Length:
31066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGTACATGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
82.6
29.4
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
82.5
0.73
0.9
75.8
38.2
Minor 5ss
35.4
-1.7
2.9
48.5
40.3
Minor BPS
48.1
-0
2
72.21
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024081
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025400
50914307 - 50947215
32909