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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_50952136_50963463_F

Intron Information:

Intron Rank:
134962
Intron Class:
major
Intron Phase:
Intron Coordinates:
50952136 - 50963463
Intron Length:
11328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACCAG
5'SS Class:
major
3'SS Sequence:
TTCCTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTCTTCTGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
62.1
44.1
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
83.7
0.76
0.7
79.4
26.2
Minor 5ss
36.6
-1.5
3.1
46.7
48.6
Minor BPS
60.8
0.42
1.8
80.07
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022605
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033118
50951881 - 50964424
12544