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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5098273_5099328_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5098273 - 5099328
Intron Length:
1056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
TTGTTTTTATAG
Flanking Amino Acid:
TKGYVDLIIKVYYKNVNPKF
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
82.1
0.72
0.8
77
36.7
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
51.5
-0
1.7
59.56
42.8

Associated Gene:

Gene:
CYB5R2
Ensembl Gene ID:
ENSAPLG00000006316
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006565
5094981 - 5103400
8420