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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5100701_5101506_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5100701 - 5101506
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAACT
Flanking Amino Acid:
KHVGMIAGGTGITPMLQLIR
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.6
0.58
1
73.3
40.9
Minor 5ss
34.9
-1.7
3.3
47.7
47.7
Minor BPS
83
1.11
1
92.13
30.1

Associated Gene:

Gene:
CYB5R2
Ensembl Gene ID:
ENSAPLG00000006316
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006565
5094981 - 5103400
8420