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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5102494_5103198_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5102494 - 5103198
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCCAC
5'SS Class:
major
3'SS Sequence:
TTATTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATAGTTTAATT
Flanking Amino Acid:
VWYTLDRPPQDWKYSSGFIT
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
63.2
43.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
86.3
0.82
0.9
84.8
35.6
Minor 5ss
36.8
-1.5
3.3
49.6
47
Minor BPS
56.5
0.28
1.8
72.07
39.2

Associated Gene:

Gene:
CYB5R2
Ensembl Gene ID:
ENSAPLG00000006316
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006565
5094981 - 5103400
8420