About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5106812_5107436_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5106812 - 5107436
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTACC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TACTCGTTCACA
Flanking Amino Acid:
AFSQGISNLTTMLSQDEMLN
Intron Amino Acid Position:
929

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
71.8
37.9
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
100
1.12
0.4
100
0
Minor 5ss
43.6
-0.7
2.5
56.2
41.1
Minor BPS
49.9
-0
2.4
68.06
44.4

Associated Gene:

Gene:
PPFIBP2
Ensembl Gene ID:
ENSAPLG00000006571
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046570
5106740 - 5161838
55099
ENSAPLT00000034644
5106740 - 5191972
85233
ENSAPLT00000019283
5106740 - 5191972
85233
ENSAPLT00000006855
5106740 - 5191972
85233
ENSAPLT00000046962
5106740 - 5191972
85233