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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51082229_51106753_R

Intron Information:

Intron Rank:
142405
Intron Class:
major
Intron Phase:
Intron Coordinates:
51082229 - 51106753
Intron Length:
24525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCTAATCTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.2
34.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
34
-1.8
2.9
42.5
44.3
Minor BPS
47.9
-0.1
1.8
60.52
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023928
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031617
51081742 - 51121273
39532