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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5109853_5110694_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5109853 - 5110694
Intron Length:
842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGAATT
5'SS Class:
major
3'SS Sequence:
ATCTTTTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATCTTTTTAATA
Flanking Amino Acid:
RGSGVHGGLIILEPRFNGDT
Intron Amino Acid Position:
787

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
79.3
33.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.5
0.6
0.9
73.7
35
Minor 5ss
42
-0.9
3.2
64.6
40.6
Minor BPS
70.9
0.65
1.1
72.5
34

Associated Gene:

Gene:
PPFIBP2
Ensembl Gene ID:
ENSAPLG00000006571
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046570
5106740 - 5161838
55099
ENSAPLT00000034644
5106740 - 5191972
85233
ENSAPLT00000019283
5106740 - 5191972
85233
ENSAPLT00000006855
5106740 - 5191972
85233
ENSAPLT00000046962
5106740 - 5191972
85233