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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5110821_5111487_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5110821 - 5111487
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTACCTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GTTACCTTAACA
Flanking Amino Acid:
HCLRRRPVEENNVSPSEVVQ
Intron Amino Acid Position:
745

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
71.8
0.49
1
66.1
39.5
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
82.7
1.02
1.1
85.49
33.2

Associated Gene:

Gene:
PPFIBP2
Ensembl Gene ID:
ENSAPLG00000006571
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006855
5106740 - 5191972
85233
ENSAPLT00000046962
5106740 - 5191972
85233
ENSAPLT00000046570
5106740 - 5161838
55099
ENSAPLT00000034644
5106740 - 5191972
85233
ENSAPLT00000019283
5106740 - 5191972
85233