Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5114498_5115184_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5114498 - 5115184

Intron Length:

687

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGATAT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTTTGAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTAAT

U12 Branch Point Sequence:

TTTTTTTGAAAG

Flanking Amino Acid:

SPKGIKKIWGKIRRTQSGNF

Intron Amino Acid Position:

543

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

80.5

27.4

Major BPS

0.42

1.2

67.3

37.8

Major PPT

73.8

0.54

1.1

77.9

34.4

Minor 5ss

41.3

-1

3.1

56.6

Minor BPS

60.8

0.2

1.6

69.04

38.3

Associated Gene:

Gene:

PPFIBP2

Ensembl Gene ID:

ENSAPLG00000006571

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046570

5106740 - 5161838

55099

ENSAPLT00000034644

5106740 - 5191972

85233

ENSAPLT00000019283

5106740 - 5191972

85233

ENSAPLT00000006855

5106740 - 5191972

85233

ENSAPLT00000046962

5106740 - 5191972

85233