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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5117459_5119443_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5117459 - 5119443
Intron Length:
1985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATTAA
5'SS Class:
major
3'SS Sequence:
TAAAAAAATGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TTTTCTCTATCC
Flanking Amino Acid:
KPVQPVVEQESKPLVKGSKY
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
75.3
29.9
Major BPS
73
0.57
1
73.6
28.6
Major PPT
54.7
0.11
1.1
45.8
44.3
Minor 5ss
45
-0.5
2.6
57.6
47.1
Minor BPS
61.5
0.34
1.9
78.94
36.5

Associated Gene:

Gene:
PPFIBP2
Ensembl Gene ID:
ENSAPLG00000006571
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034644
5106740 - 5191972
85233
ENSAPLT00000006855
5106740 - 5191972
85233
ENSAPLT00000046962
5106740 - 5191972
85233
ENSAPLT00000046570
5106740 - 5161838
55099