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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5122354_5122615_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5122354 - 5122615
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGATTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAGTACTTAATA
Flanking Amino Acid:
SPVPHKATEISGTIPVSSTN
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.9
83.8
34.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.4
0.48
1.1
71.7
37.5
Minor 5ss
27.6
-2.6
4.2
47.4
48
Minor BPS
69.6
0.61
1.5
73.68
38

Associated Gene:

Gene:
PPFIBP2
Ensembl Gene ID:
ENSAPLG00000006571
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034644
5106740 - 5191972
85233
ENSAPLT00000019283
5106740 - 5191972
85233
ENSAPLT00000006855
5106740 - 5191972
85233
ENSAPLT00000046962
5106740 - 5191972
85233
ENSAPLT00000046570
5106740 - 5161838
55099