About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5122681_5122866_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5122681 - 5122866
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TCTATTTTACAT
Flanking Amino Acid:
NPQGDLFKSEASSGELPPAT
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.5
35.1
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
72.5
0.51
0.9
69.1
35.9
Minor 5ss
43.5
-0.7
2.6
60.2
44.3
Minor BPS
49.9
0.07
1.7
68.85
42.4

Associated Gene:

Gene:
PPFIBP2
Ensembl Gene ID:
ENSAPLG00000006571
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034644
5106740 - 5191972
85233
ENSAPLT00000019283
5106740 - 5191972
85233
ENSAPLT00000006855
5106740 - 5191972
85233
ENSAPLT00000046962
5106740 - 5191972
85233
ENSAPLT00000046570
5106740 - 5161838
55099