Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5122974_5126196_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5122974 - 5126196

Intron Length:

3223

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAAATGT

5'SS Class:

major

3'SS Sequence:

TTAATGCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TAATCTTTAATG

Flanking Amino Acid:

RVKEIMIAAHGSSDRILSGG

Intron Amino Acid Position:

331

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

67.6

38.4

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

76.7

0.6

69.9

41.1

Minor 5ss

39.2

-1.2

3.2

53.4

45.6

Minor BPS

72.8

0.58

1.2

69.35

38.2

Associated Gene:

Gene:

PPFIBP2

Ensembl Gene ID:

ENSAPLG00000006571

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046570

5106740 - 5161838

55099

ENSAPLT00000034644

5106740 - 5191972

85233

ENSAPLT00000019283

5106740 - 5191972

85233

ENSAPLT00000006855

5106740 - 5191972

85233

ENSAPLT00000046962

5106740 - 5191972

85233