Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51241223_51243909_R

Intron Information:

Intron Rank:

142793

Intron Class:

major

Intron Phase:

Intron Coordinates:

51241223 - 51243909

Intron Length:

2687

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCCTA

5'SS Class:

strong_major

3'SS Sequence:

GTTGTCTTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAC

U12 Branch Point Sequence:

CCTCCCTTACAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

38.6

Major BPS

77.7

0.69

30.2

Major PPT

78.2

0.64

0.9

41.4

Minor 5ss

41.4

-1

3.1

56.1

Minor BPS

0.24

1.8

70.4

46.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024118

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039301

51240618 - 51297612

56995