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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51313447_51313536_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51313447 - 51313536
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TGGACATTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
TGAAGTTAAACT
Flanking Amino Acid:
SEEELKEHLIEARASLLLKT
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.8
38.7
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
60.7
0.24
1
51.2
42.8
Minor 5ss
37.5
-1.4
3
47.8
47.9
Minor BPS
47.1
-0.1
2.1
66.04
44.5

Associated Gene:

Gene:
SETD3
Ensembl Gene ID:
ENSAPLG00000005894
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028607
51310271 - 51367829
57559