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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51313561_51315188_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51313561 - 51315188
Intron Length:
1628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
ATGCTTATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAACA
Flanking Amino Acid:
AFLRVFCMSEEELKEHLIGE
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.7
0.6
0.9
70.5
39.3
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
79.5
0.92
1
82.37
32.8

Associated Gene:

Gene:
SETD3
Ensembl Gene ID:
ENSAPLG00000005894
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006152
51310271 - 51367829
57559
ENSAPLT00000028607
51310271 - 51367829
57559
ENSAPLT00000028102
51310271 - 51367829
57559
ENSAPLT00000027482
51310271 - 51348586
38316
ENSAPLT00000026496
51312090 - 51367829
55740
ENSAPLT00000028808
51312338 - 51358529
46192