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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51316060_51319314_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51316060 - 51319314
Intron Length:
3255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTGA
5'SS Class:
major
3'SS Sequence:
TTCATCCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTCCTTCACT
Flanking Amino Acid:
ALQDFKAGEQIYIFYGTRSN
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
59.4
42
Major BPS
100
1.24
0.5
100
0
Major PPT
78
0.63
0.8
70.1
36.4
Minor 5ss
34.8
-1.7
3.5
47.2
48.2
Minor BPS
78.7
0.98
1.7
92.9
35.6

Associated Gene:

Gene:
SETD3
Ensembl Gene ID:
ENSAPLG00000005894
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027482
51310271 - 51348586
38316
ENSAPLT00000026496
51312090 - 51367829
55740
ENSAPLT00000028808
51312338 - 51358529
46192
ENSAPLT00000006152
51310271 - 51367829
57559
ENSAPLT00000028607
51310271 - 51367829
57559
ENSAPLT00000028102
51310271 - 51367829
57559