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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51325835_51342268_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51325835 - 51342268
Intron Length:
16434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTGCATTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCTGAAACT
Flanking Amino Acid:
QYAYFYKVIQTHPNASKLPL
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77
0.61
0.9
69
41.5
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
59.6
0.38
2.3
87.23
39

Associated Gene:

Gene:
SETD3
Ensembl Gene ID:
ENSAPLG00000005894
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028102
51310271 - 51367829
57559
ENSAPLT00000027482
51310271 - 51348586
38316
ENSAPLT00000026496
51312090 - 51367829
55740
ENSAPLT00000028808
51312338 - 51358529
46192
ENSAPLT00000006152
51310271 - 51367829
57559
ENSAPLT00000028607
51310271 - 51367829
57559