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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51343120_51344129_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51343120 - 51344129
Intron Length:
1010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
CCCTCTATACTT
Flanking Amino Acid:
FGLKATREIKAEELFLWVPR
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
88.3
0.86
0.6
85.2
22.2
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
46.3
-0.2
1.9
59.42
45.1

Associated Gene:

Gene:
SETD3
Ensembl Gene ID:
ENSAPLG00000005894
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026496
51312090 - 51367829
55740
ENSAPLT00000028808
51312338 - 51358529
46192
ENSAPLT00000006152
51310271 - 51367829
57559
ENSAPLT00000028607
51310271 - 51367829
57559
ENSAPLT00000028102
51310271 - 51367829
57559
ENSAPLT00000027482
51310271 - 51348586
38316