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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51344279_51347716_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51344279 - 51347716
Intron Length:
3438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTGTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GTGTCTTTAATA
Flanking Amino Acid:
LVEKIRKKQKGLSIVFDGKR
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
78.6
35.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
75.7
0.58
1
69.4
40.3
Minor 5ss
35.7
-1.6
3.4
48.7
47.5
Minor BPS
75.4
0.79
1.1
75.69
36.1

Associated Gene:

Gene:
SETD3
Ensembl Gene ID:
ENSAPLG00000005894
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028102
51310271 - 51367829
57559
ENSAPLT00000027482
51310271 - 51348586
38316
ENSAPLT00000026496
51312090 - 51367829
55740
ENSAPLT00000028808
51312338 - 51358529
46192
ENSAPLT00000006152
51310271 - 51367829
57559
ENSAPLT00000028607
51310271 - 51367829
57559