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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51347810_51348267_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51347810 - 51348267
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATATTCACATTT
Flanking Amino Acid:
YILENLSFTEECSSPTPGPG
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
90
0.9
0.6
83.9
31.1
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
44.7
-0.3
1.9
64.25
40.2

Associated Gene:

Gene:
SETD3
Ensembl Gene ID:
ENSAPLG00000005894
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027482
51310271 - 51348586
38316