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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51349524_51358452_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51349524 - 51358452
Intron Length:
8929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TAATCTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGCTTGTTAATC
Flanking Amino Acid:
MSWRGWKMGKKSRV
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
72.6
0.51
0.9
70.1
40.8
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
55.1
0.14
2.1
66
40.4

Associated Gene:

Gene:
SETD3
Ensembl Gene ID:
ENSAPLG00000005894
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028808
51312338 - 51358529
46192