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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51369881_51370905_F

Intron Information:

Intron Rank:
1
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
51369881 - 51370905
Intron Length:
1025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TTCTGTACCACAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
AATTCCTTATTC
Flanking Amino Acid:
FIFDVGTRLGLHYDTLATGI
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.3
55.7
43.9
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
75.3
0.57
0.9
69.3
35.7
Minor 5ss
100
1.68
0.4
100
0
Minor BPS
68.8
0.57
1.5
74.13
36.5

Associated Gene:

Gene:
CCNK
Ensembl Gene ID:
ENSAPLG00000005513
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005728
51369614 - 51465577
95964