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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51370988_51371585_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51370988 - 51371585
Intron Length:
598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
ATAACTTTGAAA
Flanking Amino Acid:
FHSFKQFPRYVTGACCLFLA
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.2
90.9
28.7
Major BPS
74.8
0.62
1
67
39.8
Major PPT
86.3
0.82
0.6
85.1
22.4
Minor 5ss
43
-0.8
2.9
59.7
38
Minor BPS
55.4
0.16
1.4
63.25
36.2

Associated Gene:

Gene:
CCNK
Ensembl Gene ID:
ENSAPLG00000005513
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005728
51369614 - 51465577
95964