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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51372866_51373908_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51372866 - 51373908
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTAATATTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATA
Flanking Amino Acid:
VQMAWTFVNDSLCTTLSLQW
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73
38.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.9
0.67
0.9
70.7
43.9
Minor 5ss
31
-2.2
3.3
41
45.6
Minor BPS
76.4
0.83
1
79.34
30.5

Associated Gene:

Gene:
CCNK
Ensembl Gene ID:
ENSAPLG00000005513
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005728
51369614 - 51465577
95964