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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51374079_51374858_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51374079 - 51374858
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCTTTAAAG
Flanking Amino Acid:
VQDVPVDVLEDICHQILDLY
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73
31.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.1
0.63
1
78.8
33.5
Minor 5ss
35.8
-1.6
3.3
46.4
48.9
Minor BPS
72.6
0.57
1.4
73.64
38.5

Associated Gene:

Gene:
CCNK
Ensembl Gene ID:
ENSAPLG00000005513
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005728
51369614 - 51465577
95964