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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51380222_51382189_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51380222 - 51382189
Intron Length:
1968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CTCTCCTTCAGA
Flanking Amino Acid:
PPIPPAHPPPERKPPLTTAV
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
54.1
0.12
2.1
66.36
46.4

Associated Gene:

Gene:
CCNK
Ensembl Gene ID:
ENSAPLG00000005513
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005728
51369614 - 51465577
95964