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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5149837_5154339_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5149837 - 5154339
Intron Length:
4503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCAAATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTCTCAAATT
Flanking Amino Acid:
EGDKESLILQVSVLTDQVEA
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
74
0.54
0.9
66.1
38.4
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
53.4
0.19
2
75.83
41.7

Associated Gene:

Gene:
PPFIBP2
Ensembl Gene ID:
ENSAPLG00000006571
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006855
5106740 - 5191972
85233
ENSAPLT00000046962
5106740 - 5191972
85233
ENSAPLT00000046570
5106740 - 5161838
55099
ENSAPLT00000034644
5106740 - 5191972
85233
ENSAPLT00000019283
5106740 - 5191972
85233