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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51517993_51518286_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51517993 - 51518286
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGAGCC
5'SS Class:
major
3'SS Sequence:
TCTCCCGATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTCTTTATTT
Flanking Amino Acid:
PFGTFGNAQNKSTLLGKVLR
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
62.4
34.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.5
0.48
0.9
64.9
35.5
Minor 5ss
39.5
-1.2
3.3
51.5
39.5
Minor BPS
69.3
0.68
1.6
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005404
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005593
51510959 - 51528912
17954