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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_51518616_51520484_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51518616 - 51520484
Intron Length:
1869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATATA
5'SS Class:
major
3'SS Sequence:
TTCTCTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAA
U12 Branch Point Sequence:
TTCTCTTTGACA
Flanking Amino Acid:
DKKLCTNSSMDDVLPIYAYP
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
80.4
34.2
Major BPS
51.9
0.05
0.9
59
27.3
Major PPT
81.8
0.71
0.9
79.3
32.7
Minor 5ss
38.2
-1.3
2.9
42.5
44.5
Minor BPS
78.7
0.9
1.1
82.02
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005404
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005593
51510959 - 51528912
17954